Basic Information
Locus ID:
nbisL1-mrna-5299
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5047401 | 5052108 | + | nbisL1-mrna-5299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 57,646.13 Da | 57.24 | 82.23 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 335 | 512 | 5.99407E-115 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 334 | 441 | 1.3E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 8 | 99 | 7.2E-12 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 337 | 467 | 1.7E-19 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 3 | 119 | 6.8E-33 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 323 | 512 | 1.0E-72 | - |
| SMART | SM00232 | pad1_6 | 337 | 465 | 1.7E-14 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 338 | 468 | 29.105021 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 334 | - | - |
| Coils | Coil | Coil | 86 | 106 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16144.1 | associated molecule with the SH3 domain of STAM 3. Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro. Required for intracellular trafficking and vacuole biogenesis. | 0 |
| RefSeq | XP_050239844.1 | AMSH-like ubiquitin thioesterase 3 [Quercus robur] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MGE3 | MPN domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology