Basic Information
Locus ID:
nbisL1-mrna-5269
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
EDR1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000018F_pilon | 1044964 | 1046546 | + | nbisL1-mrna-5269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.12 | 12,573.59 Da | 35.34 | 101.88 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 49 | 111 | 1.8E-9 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 49 | 111 | 5.27E-12 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 46 | 110 | 8.9E-21 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 112 | 9.785688 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08720.2 | - | 0 |
| RefSeq | XP_034705950.1 | serine/threonine-protein kinase EDR1-like isoform X2 [Vitis riparia] | 0 |
| Q9FPR3 | Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana OX=3702 GN=EDR1 PE=1 SV=1 | 0 | |
| TrEMBL | D5FF38 | Serine/threonine protein kinase (Fragment) OS=Malus domestica OX=3750 GN=CTR2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg29921, jg4567, jg7922 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10062, gene_13174 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah006031, Ah034570 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g082460 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg16857, Sbi_jg21797, Sbi_jg22021, Sbi_jg61392 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg146, Seu_jg15949 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008241, GOSA_00008568 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl24787, Sgl29936, Sgl63052, Sgl63059, Sgl67668 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000008983, gene:ENSEOMG00000017653 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0014410, CQ.Regalona.r1.2BG0016370 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30091870, pistato.v30254600 |
| Apiaceae | Apium graveolens | 2 | Ag6G02946, Ag7G00370 |
| Arecaceae | Cocos nucifera | 4 | COCNU_02G000880, COCNU_03G001040, COCNU_03G001050 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103709593, gene-LOC103712318, gene-LOC103724347 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2378.V1.1, AsparagusV1_08.1899.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G33404, Ftri18G19739, Ftri3G02566 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G08720.1, AT5G11850.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006727m.g.v1.0, Thhalv10012636m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g07370.v2.2, Sp6g31750.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g004410.2N, BniB05g025770.2N, BniB06g038990.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2260, Ceq06G2337 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2396, Cgl06G2454 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g05260, gene.Cymno12g01150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0140s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g04260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12576 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2315, evm.TU.LG07.901 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013509, Pov_00035876 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G05130, Lb1G06902, Lb6G31450, Lb6G31451 |
| Poaceae | Echinochloa crus-galli | 10 | AH01.1927, AH01.4909, AH07.876, BH01.2312, BH01.4841 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0106550, gene-QOZ80_2BG0160060 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0037210.1, HORVU.MOREX.r3.4HG0401890.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_021603, gene-QYE76_021703, gene-QYE76_070601 |
| Poaceae | Oryza coarctata | 5 | Oco03G005780, Oco04G005990, Oco05G003450, Oco06G003540 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g12810.1, LOC_Os03g06410.1, LOC_Os10g29540.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G228200, gene-BS78_01G474100 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101103, Pt_Chr0101206, Pt_Chr0605392 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G036810, Chr04G003640, Chr04G004000, Chr05G005340 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G255000, Tel4E01G463500 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG019560, gene_TRIDC1BG025030 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G131600.1, TraesCS1B02G154400.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb004500_P001, Zm00001eb205140_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2849, nbis-gene-4428 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g15467, Zma_g2028, Zma_g4375 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.773, evm.TU.LG15.156, evm.TU.LG16.1234 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g12640 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.719, evm.TU.Scaffold_1_RagTag.215 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-13775, nbisL1-mrna-3391, nbisL1-mrna-3392 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18487, nbisL1-mrna-8870 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-5268, nbisL1-mrna-5269, nbisL1-mrna-8966 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000012l.148, evm.TU.utg000033l.502 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00011256, Maker00014533 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-3884, nbisL1-mrna-7812 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-197, nbisL1-mrna-8000 |
| Salicaceae | Populus euphratica | 6 | populus_peu05029, populus_peu05030, populus_peu12660 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132635897, gene-LOC132645235 |
| Solanaceae | Solanum chilense | 1 | SOLCI006483700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005697, gene-LOC107028965 |
| Tamaricaceae | Reaumuria soongarica | 4 | STRG.24359_chr08_+, gene_13391, gene_16994, gene_17202 |
| Tamaricaceae | Tamarix chinensis | 4 | TC02G0280, TC05G2306, TC06G0825, TC11G2057 |
| Zosteraceae | Zostera marina | 1 | Zosma03g32940.v3.1 |