Basic Information
Locus ID:
nbisL1-mrna-5261
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4672992 | 4707266 | + | nbisL1-mrna-5261 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 476,366.38 Da | 45.27 | 89.42 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2646 | 2755 | 4.3085E-7 | - |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 7.2E-31 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 578 | 803 | 8.8E-32 | IPR031642 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3306 | 3562 | 4.6E-12 | IPR009543 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 383 | 4.1E-68 | IPR031646 |
| Pfam | PF00168 | C2 domain | 2645 | 2747 | 6.5E-6 | IPR000008 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2308 | 2393 | 9.1E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2001 | 2168 | 5.2E-11 | IPR009291 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2628 | 2746 | 2.49E-8 | IPR035892 |
| SUPERFAMILY | SSF50729 | PH domain-like | 841 | 948 | 7.46E-8 | - |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2629 | 2766 | 3.8E-7 | IPR035892 |
| Gene3D | G3DSA:2.30.29.30 | - | 839 | 947 | 2.5E-6 | IPR011993 |
| SMART | SM00239 | C2_3c | 2645 | 2764 | 4.5E-4 | IPR000008 |
| SMART | SM00233 | PH_update | 832 | 943 | 0.0032 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 831 | 941 | 7.0136 | IPR001849 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2627 | 2765 | 11.288101 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4205 | 4231 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_021642898.1 | uncharacterized protein LOC110637210 [Hevea brasiliensis] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MAA2 | Uncharacterized protein LOC8261314 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology