Basic Information
Locus ID:
nbisL1-mrna-5258
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4651240 | 4656993 | + | nbisL1-mrna-5258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.14 | 132,642.38 Da | 64.18 | 56.04 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 702 | 831 | 9.55741E-62 | - |
| CDD | cd00201 | WW | 23 | 52 | 0.00434942 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 507 | 677 | 1.2E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 714 | 822 | 1.8E-32 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 2.05E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 554 | 841 | 3.63E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 693 | 863 | 9.8E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 459 | 692 | 1.9E-86 | IPR027417 |
| SMART | SM00490 | helicmild6 | 742 | 822 | 8.2E-35 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 6.1E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 502 | 705 | 1.0E-65 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 483 | 511 | 10.273145 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 717 | 861 | 25.964989 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 514 | 688 | 30.905409 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 10.6792 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 634 | 642 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1190 | 1214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1068 | 1117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 945 | 1214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1137 | 1151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1053 | 1067 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 986 | 1030 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021684464.1 | DEAD-box ATP-dependent RNA helicase 46 [Hevea brasiliensis] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9W721 | DEAD-box ATP-dependent RNA helicase 46 OS=Manihot esculenta OX=3983 GN=MANES_03G080100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology