Basic Information
Locus ID:
nbisL1-mrna-5245
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4529313 | 4533018 | + | nbisL1-mrna-5245 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 25,128.25 Da | 47.02 | 81.18 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 32 | 87 | 3.8E-8 | IPR036770 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 115 | 219 | 3.92E-9 | IPR011009 |
| Gene3D | G3DSA:1.25.40.20 | - | 35 | 86 | 1.2E-6 | IPR036770 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 107 | 220 | 2.9E-6 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002528052.3 | integrin-linked protein kinase 1 isoform X2 [Ricinus communis] | 0 |
| TrEMBL | B9SPY3 | Serine-threonine protein kinase, putative OS=Ricinus communis OX=3988 GN=RCOM_0466780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag4G00547 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2909.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G12649 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029649, Pov_00029657 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.720, evm.TU.Scaffold_3_RagTag.721 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1240 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13793 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6407 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.778 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012750 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5245 |
| Salicaceae | Populus euphratica | 1 | populus_peu24920 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623793 |
| Solanaceae | Solanum chilense | 1 | SOLCI007409100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009611 |