Basic Information
Locus ID:
nbisL1-mrna-5243
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3180867 | 3181874 | + | nbisL1-mrna-5243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 37,908.04 Da | 71.04 | 65.46 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 236 | 278 | 4.78543E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 24 | 57 | 7.6E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 236 | 278 | 3.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 217 | 284 | 7.29E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 200 | 284 | 8.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 237 | 277 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 237 | 278 | 12.1057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 153 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039059397.1 | probable E3 ubiquitin-protein ligase RHC1A isoform X2 [Hibiscus syriacus] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P4PXD9 | RING-type E3 ubiquitin transferase OS=Gossypium arboreum OX=29729 GN=LOC108482865 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology