Basic Information
Locus ID:
nbisL1-mrna-5242
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3172942 | 3173916 | + | nbisL1-mrna-5242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 36,224.31 Da | 66.86 | 67.96 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 234 | 276 | 5.03203E-23 | - |
| Pfam | PF13639 | Ring finger domain | 234 | 276 | 4.1E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 24 | 57 | 1.6E-12 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 217 | 282 | 1.72E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 282 | 6.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 235 | 275 | 2.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 235 | 276 | 12.297489 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039059397.1 | probable E3 ubiquitin-protein ligase RHC1A isoform X2 [Hibiscus syriacus] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A3C8H5 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00009023pilonHSYRG00201 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology