Basic Information
Locus ID:
nbisL1-mrna-5233
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase BAH1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 3982356 | 3984390 | - | nbisL1-mrna-5233 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 11,191.96 Da | 59.20 | 110.73 | -0.25 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02860.1 | SPX (SYG1/Pho81/XPR1) domain-containing protein. Encodes a likely ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses. Targeted by MIR827. | 0 |
| RefSeq | XP_048233212.1 | - | 0 |
| Q9SRX9 | E3 ubiquitin-protein ligase NLA OS=Arabidopsis thaliana OX=3702 GN=NLA PE=1 SV=1 | 0 | |
| TrEMBL | B9SAP6 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31867 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30277220 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.438.V1.1, AsparagusV1_07.3386.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G28037 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G38920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016996m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g21300.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1761 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1752 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1784 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1297, BH01.1347, CH01.1390 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0223630, gene-QOZ80_3BG0268400 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0193580.1, HORVU.MOREX.r3.4HG0358590.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063293 |
| Poaceae | Oryza coarctata | 1 | Oco05G019190 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g44810.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G140700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104568 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G009080, Chr07G023970, Chr12G028020 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G591100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG054190, gene_TRIDC5BG058180 |
| Poaceae | Triticum aestivum | 2 | TraesCS5B02G373000.1, TraesCS5D02G380200.1 |
| Poaceae | Zea mays | 1 | Zm00001eb052950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20522 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3160, Zma_g838 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4095 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14692 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.590 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004904, Maker00005833 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5233 |
| Salicaceae | Populus euphratica | 2 | populus_peu12367, populus_peu26012 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643858 |
| Solanaceae | Solanum chilense | 1 | SOLCI003449100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003489 |
| Zosteraceae | Zostera marina | 1 | Zosma04g06290.v3.1 |