Basic Information
Locus ID:
nbisL1-mrna-5214
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4249185 | 4253076 | + | nbisL1-mrna-5214 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 54,660.57 Da | 38.73 | 92.52 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07983 | X8 domain | 366 | 437 | 2.0E-17 | IPR012946 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 29 | 348 | 1.9E-80 | IPR000490 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 29 | 348 | 5.17E-85 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 28 | 353 | 4.6E-113 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 359 | 451 | 1.3E-10 | - |
| SMART | SM00768 | X8_cls | 365 | 450 | 1.6E-45 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 263 | 276 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66250.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_021600647.1 | glucan endo-1,3-beta-glucosidase 2 [Manihot esculenta] | 0 |
| Q9C7U5 | Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana OX=3702 GN=At1g66250 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2C9WDE3 | glucan endo-1,3-beta-D-glucosidase OS=Manihot esculenta OX=3983 GN=MANES_02G077200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology