Basic Information
Locus ID:
nbisL1-mrna-5209
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000018F_pilon | 660401 | 663215 | - | nbisL1-mrna-5209 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 44,624.53 Da | 42.45 | 81.17 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 259 | 295 | 0.0011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 42 | 299 | 5.65E-24 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 96 | 371 | 4.8E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 255 | 296 | 0.018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 212 | 252 | 0.089 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_021621204.1 | autophagy-related protein 18a isoform X1 [Manihot esculenta] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JU14 | Autophagy-related protein 18a-like OS=Jatropha curcas OX=180498 GN=JCGZ_23323 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology