Basic Information
Locus ID:
nbisL1-mrna-5205
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 3837985 | 3842384 | - | nbisL1-mrna-5205 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 31,823.63 Da | 46.86 | 48.72 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 206 | 263 | 6.6E-25 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 24 | 104 | 4.0E-20 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 158 | 201 | 1.2E-7 | IPR001841 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 17 | 93 | 6.28E-19 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 95 | 151 | 3.4E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 207 | 3.03E-11 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 230 | 269 | 4.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 223 | 3.7E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 159 | 201 | 5.8E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 17 | 92 | 24.626476 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 94 | 158 | 31.148237 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 159 | 202 | 11.677863 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_012082671.1 | E3 ubiquitin-protein ligase MIEL1 [Jatropha curcas] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JVU6 | RING finger and CHY zinc finger domain-containing protein 1 OS=Jatropha curcas OX=180498 GN=JCGZ_13862 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology