Basic Information
Locus ID:
nbisL1-mrna-5202
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
TIR1
Description:
Protein TRANSPORT INHIBITOR RESPONSE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 3821791 | 3825623 | + | nbisL1-mrna-5202 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 65,681.14 Da | 52.32 | 94.29 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 479 | 498 | 1.8 | IPR001611 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 65 | 111 | 5.3E-27 | IPR041101 |
| Pfam | PF18511 | F-box | 7 | 46 | 1.9E-19 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 36 | 533 | 8.83E-36 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 39 | 2.22E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 44 | 5.9E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 45 | 575 | 6.8E-190 | IPR032675 |
| SMART | SM00256 | fbox_2 | 8 | 49 | 0.0023 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 103 | 127 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 430 | 453 | 350.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 312 | 335 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 370 | 394 | 7.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 182 | 208 | 590.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 287 | 311 | 480.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 128 | 153 | 41.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 479 | 503 | 22.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021651512.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Hevea brasiliensis] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2M9Y7 | Uncharacterized protein MANES_05G067800 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology