Basic Information
Locus ID:
nbisL1-mrna-5182
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
LEC14B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 3692252 | 3698514 | - | nbisL1-mrna-5182 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 55,768.51 Da | 39.19 | 73.11 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 391 | 432 | 0.17 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 438 | 473 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 313 | 350 | 0.006 | IPR001680 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 119 | 490 | 7.06E-43 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 369 | 494 | 5.9E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 99 | 367 | 2.3E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 387 | 432 | 0.85 | IPR001680 |
| SMART | SM00320 | WD40_4 | 230 | 274 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 435 | 474 | 2.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 311 | 350 | 9.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 227 | 0.41 | IPR001680 |
| SMART | SM00320 | WD40_4 | 100 | 139 | 39.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 442 | 474 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 442 | 474 | 9.071966 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 195 | 236 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 318 | 352 | 10.100143 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 318 | 359 | 12.212779 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03020.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_015578238.1 | LEC14B protein [Ricinus communis] | 0 |
| Q40153 | LEC14B protein OS=Lithospermum erythrorhizon OX=34254 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MCQ9 | LEC14B homolog OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg27965, jg8840 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4240 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah020659, Ah029679 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g165700 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg16358, Sbi_jg35803, Sbi_jg51804, Sbi_jg829 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13358, Seu_jg3896 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019786 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72037, Sgl75604 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006827, gene:ENSEOMG00000012738 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0016640, CQ.Regalona.r1.3BG0016510 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30011350, pistato.v30238220 |
| Apiaceae | Apium graveolens | 5 | Ag10G00772, Ag2G02426, Ag5G02458, Ag8G01695, Ag9G01820 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G002780, scaffold006566G000150 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721036, gene-LOC103724227 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2023.V1.1, AsparagusV1_07.935.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G03224, Ftri3G19980, Ftri9G25668 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G03020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028659m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03060.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g039150.2N, BniB08g045690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1641 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1701 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g05240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0973s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g22820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6289, nbisL1-mrna-9649 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.239, evm.TU.LG11.1392, evm.TU.LG11.995 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024805 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36260 |
| Poaceae | Echinochloa crus-galli | 7 | AH05.2503, AH05.775, BH02.1792, BH05.1002, BH05.2585 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0017480, gene-QOZ80_1BG0066380 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0014190.1, HORVU.MOREX.r3.1HG0019410.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009485, gene-QYE76_013335 |
| Poaceae | Oryza coarctata | 5 | Oco01G010620, Oco02G011360, Oco09G009060, Oco10G002120 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g28680.1, LOC_Os05g05210.1, LOC_Os05g33710.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_09G040800, gene-BS78_09G141300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0500549, Pt_Chr0505205, Pt_Chr0506203 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G008020, Chr13G016820, Chr18G001260, Chr18G009000 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G134700, Tel1E01G170400, Tel1E01G422800 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG008920, gene_TRIDC1AG012340 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G065300.2, TraesCS1A02G086800.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb349670_P002, Zm00001eb354420_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18207, nbis-gene-52838 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g26411, Zma_g26852, Zma_g27685 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.2022, evm.TU.LG03.761, evm.TU.LG12.968 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10740 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.521, evm.TU.Scaffold_9_RagTag.875 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1442, nbisL1-mrna-21349 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19926, nbisL1-mrna-21386 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18431, nbisL1-mrna-6245 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.546, evm.TU.utg000019l.900 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009533, Maker00012425 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1530, nbisL1-mrna-6297 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2052, nbisL1-mrna-5182 |
| Salicaceae | Populus euphratica | 4 | populus_peu07816, populus_peu22033, populus_peu22037 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605607, gene-LOC132645046 |
| Solanaceae | Solanum chilense | 2 | SOLCI001973800, SOLCI002921100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008401, gene-LOC107022037 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8484 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1524 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20360.v3.1 |