Basic Information
Locus ID:
nbisL1-mrna-5181
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 3687710 | 3689069 | + | nbisL1-mrna-5181 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 43,889.22 Da | 44.94 | 105.97 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 153 | 174 | 0.0034 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 197 | 211 | 0.48 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 35 | 73 | 7.6E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 39 | 374 | 8.28E-41 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 293 | 375 | 5.9E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 197 | 292 | 6.8E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 196 | 2.8E-36 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 199 | 220 | 7.018892 | IPR001611 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_012092328.1 | LRR receptor-like serine/threonine-protein kinase SIK1 [Jatropha curcas] | 0 |
| TrEMBL | A0A127AUF3 | LRR-RLK OS=Vernicia fordii OX=73154 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology