Basic Information
Locus ID:
nbisL1-mrna-5172
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000018F_pilon | 468305 | 477567 | - | nbisL1-mrna-5172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 129,290.54 Da | 42.97 | 82.98 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 949 | 982 | 0.0097 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 331 | 534 | 4.21E-21 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1006 | 1137 | 4.21E-8 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 490 | 987 | 6.59E-41 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 789 | 1002 | 8.0E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 316 | 544 | 8.9E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1003 | 1143 | 1.2E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 545 | 693 | 1.1E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1097 | 1129 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 584 | 625 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 535 | 0.0091 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1038 | 1074 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 581 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 943 | 982 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 900 | 940 | 0.4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.0E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 335 | 376 | 0.13 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.9E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 861 | 897 | 470.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 437 | 6.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 950 | 991 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.850914 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 950 | 985 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 603 | 634 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.093014 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1145 | 1168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1129 | 1168 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021622866.1 | topless-related protein 3 [Manihot esculenta] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9VDF5 | Topless-related protein 3-like OS=Manihot esculenta OX=3983 GN=MANES_09G174100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology