Basic Information
Locus ID:
nbisL1-mrna-5159
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000018F_pilon | 397171 | 403131 | - | nbisL1-mrna-5159 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 68,196.80 Da | 42.29 | 83.36 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 199 | 396 | 3.26212E-102 | - |
| CDD | cd18794 | SF2_C_RecQ | 397 | 530 | 1.70922E-64 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 207 | 376 | 8.2E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 412 | 520 | 2.1E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 245 | 541 | 7.62E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 167 | 396 | 2.7E-84 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 397 | 589 | 3.8E-52 | IPR027417 |
| SMART | SM00487 | ultradead3 | 201 | 405 | 5.3E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 439 | 521 | 1.1E-22 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 199 | 569 | 6.7E-143 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 411 | 561 | 18.441113 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 213 | 389 | 21.046766 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 328 | 337 | - | IPR002464 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_021645845.1 | ATP-dependent DNA helicase Q-like 1 [Hevea brasiliensis] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A837A6J4 | ATP-dependent DNA helicase OS=Salix suchowensis OX=1278906 GN=IMY05_005G0015300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology