Basic Information
Locus ID:
nbisL1-mrna-5154
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Receptor-like cytosolic serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 22771244 | 22773640 | + | nbisL1-mrna-5154 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 46,942.11 Da | 35.98 | 100.48 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 198 | 273 | 4.1E-12 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 119 | 328 | 7.14E-35 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 111 | 209 | 3.9E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 211 | 329 | 1.2E-14 | - |
| SMART | SM00220 | serkin_6 | 135 | 337 | 2.8E-7 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 337 | 11.877521 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18910.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_011045458.1 | PREDICTED: serine/threonine-protein kinase CDL1-like isoform X2 [Populus euphratica] | 0 |
| P0DH62 | Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii OX=88036 GN=SELMODRAFT_444075 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K1Z7Q1 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G140300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28913, jg846 |
| Apiaceae | Apium graveolens | 1 | Ag9G00835 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5154 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10971 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9315 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.1208 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005547 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-24118, nbisL1-mrna-24119 |
| Salicaceae | Populus euphratica | 2 | populus_peu08649, populus_peu36701 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599368 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012481 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7940 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0196 |