Basic Information
Locus ID:
nbisL1-mrna-5128
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the peptidase A1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 2141287 | 2142326 | + | nbisL1-mrna-5128 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 9,390.84 Da | 45.23 | 90.24 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05184 | Saposin-like type B, region 1 | 10 | 34 | 1.9E-6 | IPR007856 |
| SUPERFAMILY | SSF47862 | Saposin | 6 | 42 | 4.45E-6 | IPR011001 |
| Gene3D | G3DSA:1.10.225.10 | - | 10 | 47 | 5.8E-22 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 48 | 80 | 5.8E-22 | IPR021109 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04460.2 | Saposin-like aspartyl protease family protein. | 0 |
| RefSeq | XP_039023248.1 | aspartic proteinase-like isoform X2 [Hibiscus syriacus] | 0 |
| Q42456 | Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0567100 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A3BEC4 | Aspartic proteinase oryzasin-1, putative isoform 3 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110198pilonHSYRG00090 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg38318 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25822 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000010767 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G004750 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3149.V1.1 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5128 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049989 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G098300 |
| Poaceae | Triticum aestivum | 1 | TraesCS3B02G269300.1 |
| Poaceae | Zea mays | 19 | Zm00001eb046200_P001, Zm00001eb056740_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-56591 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g09600 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22268 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9719 |
| Zosteraceae | Zostera marina | 1 | Zosma04g06120.v3.1 |