Basic Information
Locus ID:
nbisL1-mrna-5127
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000018F_pilon | 202542 | 204795 | + | nbisL1-mrna-5127 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 49,529.83 Da | 52.04 | 83.76 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 100 | 407 | 3.3E-87 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 68 | 443 | 2.54E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 61 | 440 | 1.4E-120 | IPR012334 |
| SMART | SM00710 | pbh1 | 270 | 290 | 5600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 300 | 321 | 220.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 220 | 246 | 3000.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 247 | 268 | 310.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 329 | 350 | 1500.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 277 | 290 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_002307031.4 | polygalacturonase At1g48100 [Populus trichocarpa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8D0E2 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_020301 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology