Basic Information
Locus ID:
nbisL1-mrna-5121
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 2097657 | 2104098 | - | nbisL1-mrna-5121 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.92 | 124,295.58 Da | 57.95 | 58.73 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 673 | 802 | 3.75457E-61 | - |
| CDD | cd00201 | WW | 22 | 51 | 1.05437E-4 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 685 | 793 | 2.9E-32 | IPR001650 |
| Pfam | PF00397 | WW domain | 21 | 51 | 2.5E-6 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 478 | 648 | 3.7E-49 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 525 | 810 | 7.31E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 53 | 3.25E-8 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 15 | 53 | 1.1E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 429 | 663 | 6.9E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 664 | 834 | 5.4E-59 | IPR027417 |
| SMART | SM00490 | helicmild6 | 713 | 793 | 1.2E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 20 | 53 | 1.1E-7 | IPR001202 |
| SMART | SM00487 | ultradead3 | 473 | 676 | 4.4E-64 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 454 | 482 | 11.296582 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 688 | 832 | 25.53178 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.4869 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 485 | 659 | 30.798523 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 605 | 613 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 25 | 51 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 835 | 1055 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 993 | 1008 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 992 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 932 | 957 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1019 | 1042 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_039023250.1 | DEAD-box ATP-dependent RNA helicase 46-like [Hibiscus syriacus] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A3C4V3 | DEAD-box ATP-dependent RNA helicase 40 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00010573pilonHSYRG00004 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology