Basic Information
Locus ID:
nbisL1-mrna-5119
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Homocysteine s-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 3316123 | 3320465 | + | nbisL1-mrna-5119 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 37,068.28 Da | 36.88 | 88.39 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02574 | Homocysteine S-methyltransferase | 24 | 331 | 7.2E-77 | IPR003726 |
| SUPERFAMILY | SSF82282 | Homocysteine S-methyltransferase | 18 | 335 | 9.16E-84 | IPR036589 |
| Gene3D | G3DSA:3.20.20.330 | - | 11 | 331 | 6.2E-103 | IPR036589 |
| PIRSF | PIRSF037505 | BHMT | 14 | 209 | 4.6E-7 | IPR017226 |
| PIRSF | PIRSF037505 | BHMT | 289 | 341 | 1.4 | IPR017226 |
| ProSiteProfiles | PS50970 | Homocysteine-binding domain profile. | 11 | 333 | 47.636925 | IPR003726 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63250.1 | homocysteine methyltransferase 2. Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds. | 0 |
| RefSeq | XP_021680537.1 | homocysteine S-methyltransferase 2-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9M1W4 | Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=HMT-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K0A5 | Homocysteine S-methyltransferase 2 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology