Basic Information
Locus ID:
nbisL1-mrna-5119
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 22531714 | 22534964 | - | nbisL1-mrna-5119 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 47,203.03 Da | 37.23 | 80.81 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 366 | 401 | 8.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 222 | 258 | 0.082 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 24 | 95 | 4.4E-22 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 345 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 301 | 3.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 120 | 403 | 8.66E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 420 | 5.5E-131 | IPR015943 |
| SMART | SM00320 | WD40_4 | 261 | 301 | 3.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 258 | 8.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 362 | 402 | 0.0022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 169 | 209 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 345 | 3.0E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 267 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 369 | 403 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 347 | 11.391954 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 347 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 176 | 210 | 9.388329 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 303 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 176 | 210 | 11.210233 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 196 | 210 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 332 | 346 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 332 | 346 | 3.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 288 | 302 | 3.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 196 | 210 | 3.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_024463944.1 | WD-40 repeat-containing protein MSI2 [Populus trichocarpa] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J0N7 | WD-40 repeat-containing protein MSI2-like OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology