Basic Information
Locus ID:
nbisL1-mrna-5116
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the disease resistance NB-LRR family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1713476 | 1720980 | + | nbisL1-mrna-5116 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 147,227.84 Da | 37.69 | 102.98 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 166 | 393 | 1.8E-39 | IPR002182 |
| SUPERFAMILY | SSF52047 | RNI-like | 988 | 1232 | 1.49E-9 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 499 | 970 | 5.24E-26 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 151 | 404 | 1.25E-47 | IPR027417 |
| Gene3D | G3DSA:1.10.8.430 | - | 314 | 396 | 6.3E-16 | IPR042197 |
| Gene3D | G3DSA:3.40.50.300 | - | 150 | 311 | 9.7E-31 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 538 | 1046 | 1.2E-39 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1057 | 1237 | 2.8E-12 | IPR032675 |
| SMART | SM00382 | AAA_5 | 176 | 349 | 3.0E-5 | IPR003593 |
| PRINTS | PR00364 | Disease resistance protein signature | 615 | 631 | 1.0E-21 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 346 | 360 | 1.0E-21 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 179 | 194 | 1.0E-21 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 252 | 266 | 1.0E-21 | - |
| Coils | Coil | Coil | 35 | 62 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27190.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_025013768.2 | uncharacterized protein LOC8266842 isoform X3 [Ricinus communis] | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MMH8 | Putative disease resistance protein At4g27220 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology