Basic Information
Locus ID:
nbisL1-mrna-5110
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 22481167 | 22490422 | + | nbisL1-mrna-5110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 201,189.88 Da | 49.34 | 84.32 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1447 | 1860 | 7.89715E-122 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1550 | 1865 | 9.0E-80 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 189 | 656 | 8.83E-43 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1439 | 1858 | 1.44E-93 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1387 | 1628 | 1.0E-41 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1737 | 1863 | 1.1E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 180 | 489 | 1.5E-53 | IPR011989 |
| SMART | SM00185 | arm_5 | 264 | 305 | 29.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 347 | 385 | 10.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 221 | 262 | 66.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1461 | 1865 | 1.6E-85 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1566 | 1865 | 54.89378 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 971 | 1093 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1056 | 1093 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 976 | 1032 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1033 | 1047 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1106 | 1145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 692 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 67 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_011046281.1 | PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Populus euphratica] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0DTV6 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology