halophFGD

Basic Information

Locus ID: nbisL1-mrna-5089

Species & Taxonomic ID: Hibiscus hamabo Siebold & Zucc. & 1841

Genome Assembly:

Description: Belongs to the glycosyl hydrolase 28 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	1882752	1884391	+	nbisL1-mrna-5089

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.15	40,606.07 Da	25.85	88.70	-0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00295	Glycosyl hydrolases family 28	303	365	5.8E-10	IPR000743
Pfam	PF00295	Glycosyl hydrolases family 28	75	301	3.7E-51	IPR000743
SUPERFAMILY	SSF51126	Pectin lyase-like	45	377	3.0E-83	IPR011050
Gene3D	G3DSA:2.160.20.10	-	41	374	9.0E-76	IPR012334

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0004650 (polygalacturonase activity)

KEGG Pathway

KO Term:

K01213 (galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67])

Pathway:

ko00040 (Pentose and glucuronate interconversions) map00040 (Pentose and glucuronate interconversions) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Module:

M00081 (Pectin degradation)

Reaction:

R01982 (Pectate + H2O <=> D-Galacturonate + Pectate) R07413 (Digalacturonate + H2O <=> 2 D-Galacturonate)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G18180.1	Pectin lyase-like superfamily protein.
RefSeq	XP_039025150.1	exopolygalacturonase clone GBGE184-like [Hibiscus syriacus]
Swiss-Prot	P49062	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1
TrEMBL	A0A6A3CPW2	Putative Pectin lyase superfamily protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002841pilonHSYRG00039 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	16	jg11252, jg1127, jg12389, jg19091, jg19193, jg19245, jg19246 ... jg19247, jg21163, jg21164, jg21165, jg21166, jg21167, jg21168, jg38201, jg8914
Aizoaceae	Mesembryanthemum crystallinum	7	gene_20663, gene_26589, gene_26598, gene_4385, gene_6375 ... gene_7180, gene_7181
Amaranthaceae	Atriplex hortensis	12	Ah008992, Ah008993, Ah009850, Ah021233, Ah023812, Ah023814 ... Ah023817, Ah023818, Ah029328, Ah029329, Ah029332, Ah029393
Amaranthaceae	Beta vulgaris	10	BVRB_1g003230, BVRB_1g008520, BVRB_1g008530, BVRB_1g008540 ... BVRB_1g008550, BVRB_1g008560, BVRB_4g089730, BVRB_7g163430, BVRB_9g204800, BVRB_9g215820
Amaranthaceae	Salicornia bigelovii	12	Sbi_jg11210, Sbi_jg1273, Sbi_jg18410, Sbi_jg29372 ... Sbi_jg29374, Sbi_jg29375, Sbi_jg3592, Sbi_jg3593, Sbi_jg3594, Sbi_jg46182, Sbi_jg59976, Sbi_jg62926
Amaranthaceae	Salicornia europaea	7	Seu_jg20513, Seu_jg23946, Seu_jg3439, Seu_jg4728, Seu_jg6359 ... Seu_jg6360, Seu_jg6361
Amaranthaceae	Suaeda aralocaspica	8	GOSA_00000821, GOSA_00000822, GOSA_00000825, GOSA_00000826 ... GOSA_00005441, GOSA_00017390, GOSA_00021261, GOSA_00026807
Amaranthaceae	Suaeda glauca	20	Sgl03281, Sgl08351, Sgl11823, Sgl11824, Sgl11825, Sgl11980 ... Sgl11981, Sgl11982, Sgl17317, Sgl17318, Sgl17319, Sgl23499, Sgl28630, Sgl51591, Sgl51619, Sgl56245, Sgl56924, Sgl61755, Sgl74073, Sgl77554
Amaranthaceae	Chenopodium album	20	gene:ENSEOMG00000005440, gene:ENSEOMG00000008276 ... gene:ENSEOMG00000012781, gene:ENSEOMG00000012927, gene:ENSEOMG00000013802, gene:ENSEOMG00000014909, gene:ENSEOMG00000015645, gene:ENSEOMG00000028708, gene:ENSEOMG00000032474, gene:ENSEOMG00000033652, gene:ENSEOMG00000036348, gene:ENSEOMG00000038062, gene:ENSEOMG00000040757, gene:ENSEOMG00000042300, gene:ENSEOMG00000042912, gene:ENSEOMG00000048109, gene:ENSEOMG00000048272, gene:ENSEOMG00000049263, gene:ENSEOMG00000049605, gene:ENSEOMG00000050734
Amaranthaceae	Chenopodium quinoa	10	CQ.Regalona.r1.1AG0011410, CQ.Regalona.r1.1AG0011420 ... CQ.Regalona.r1.1BG0014520, CQ.Regalona.r1.1BG0014530, CQ.Regalona.r1.2BG0001760, CQ.Regalona.r1.3AG0017150, CQ.Regalona.r1.4BG0025320, CQ.Regalona.r1.7BG0004500, CQ.Regalona.r1.7BG0014710, CQ.Regalona.r1.9AG0020150
Anacardiaceae	Pistacia vera	30	pistato.v30017460, pistato.v30017470, pistato.v30030410 ... pistato.v30057060, pistato.v30062540, pistato.v30098680, pistato.v30098690, pistato.v30098720, pistato.v30099160, pistato.v30109920, pistato.v30109970, pistato.v30111260, pistato.v30116500, pistato.v30116510, pistato.v30116520, pistato.v30116530, pistato.v30116540, pistato.v30116550, pistato.v30121930, pistato.v30121950, pistato.v30122000, pistato.v30122030, pistato.v30122050, pistato.v30122070, pistato.v30143990, pistato.v30153970, pistato.v30155650, pistato.v30234000, pistato.v30243670, pistato.v30296830
Apiaceae	Apium graveolens	10	Ag10G01824, Ag10G02873, Ag1G01976, Ag1G01977, Ag2G01668 ... Ag2G02513, Ag4G02001, Ag8G01768, AgUnG00300, AgUnG01377
Arecaceae	Cocos nucifera	4	COCNU_01G006790, COCNU_01G007350, COCNU_01G011400 ... COCNU_16G003720
Arecaceae	Phoenix dactylifera	3	gene-LOC103713565, gene-LOC103717066, gene-LOC103718419
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.252.V1.1, AsparagusV1_02.1860.V1.1 ... AsparagusV1_05.1520.V1.1, AsparagusV1_05.3043.V1.1, AsparagusV1_05.3044.V1.1, AsparagusV1_05.3106.V1.1, AsparagusV1_07.1414.V1.1, AsparagusV1_09.195.V1.1
Asteraceae	Flaveria trinervia	8	Ftri14G10157, Ftri14G13434, Ftri15G14507, Ftri15G30646 ... Ftri18G28111, Ftri3G27933, Ftri3G30870, Ftri7G11290
Brassicaceae	Arabidopsis thaliana	20	AT1G02790.1, AT1G17150.1, AT1G43080.1, AT1G43090.1 ... AT1G43100.1, AT1G78400.1, AT2G15450.1, AT2G15460.1, AT2G15470.1, AT2G26620.1, AT2G33160.1, AT2G40310.1, AT3G07820.1, AT3G07830.1, AT3G07840.1, AT3G07850.1, AT3G14040.1, AT4G13760.1, AT4G18180.1, AT5G48140.1
Brassicaceae	Eutrema salsugineum	13	Thhalv10004361m.g.v1.0, Thhalv10005587m.g.v1.0 ... Thhalv10007721m.g.v1.0, Thhalv10009339m.g.v1.0, Thhalv10009641m.g.v1.0, Thhalv10017738m.g.v1.0, Thhalv10017763m.g.v1.0, Thhalv10018650m.g.v1.0, Thhalv10020501m.g.v1.0, Thhalv10020866m.g.v1.0, Thhalv10020872m.g.v1.0, Thhalv10027030m.g.v1.0, Thhalv10027416m.g.v1.0
Brassicaceae	Schrenkiella parvula	13	Sp1g01760.v2.2, Sp1g15300.v2.2, Sp1g21630.v2.2 ... Sp2g18540.v2.2, Sp2g19550.v2.2, Sp3g06750.v2.2, Sp3g06760.v2.2, Sp3g06770.v2.2, Sp4g15460.v2.2, Sp4g22640.v2.2, Sp5g33500.v2.2, Sp6g09060.v2.2, Sp7g15940.v2.2
Brassicaceae	Brassica nigra	21	BniB01g005060.2N, BniB01g011140.2N, BniB01g056140.2N ... BniB02g000330.2N, BniB02g070180.2N, BniB02g072160.2N, BniB03g000220.2N, BniB03g016990.2N, BniB03g023790.2N, BniB03g023800.2N, BniB03g023810.2N, BniB03g027360.2N, BniB03g038220.2N, BniB03g057790.2N, BniB03g066440.2N, BniB04g031560.2N, BniB07g058840.2N, BniB07g058850.2N, BniB08g004160.2N, BniB08g021050.2N, BniB08g026090.2N
Casuarinaceae	Casuarina equisetifolia	10	Ceq01G1402, Ceq01G1403, Ceq01G1405, Ceq01G1406, Ceq01G1408 ... Ceq02G2300, Ceq03G0052, Ceq06G0995, Ceq07G1897, Ceq09G1107
Casuarinaceae	Casuarina glauca	14	Cgl01G1574, Cgl01G1576, Cgl01G1581, Cgl01G1582, Cgl01G1583 ... Cgl01G1584, Cgl01G1589, Cgl02G2391, Cgl02G2392, Cgl03G0056, Cgl03G1475, Cgl06G1026, Cgl07G2067, Cgl09G1203
Cymodoceaceae	Cymodocea nodosa	9	gene.Cymno01g05280, gene.Cymno01g05380, gene.Cymno01g05420 ... gene.Cymno01g05470, gene.Cymno01g05490, gene.Cymno01g05540, gene.Cymno06g09020, gene.Cymno06g09030, gene.Cymno06g09040
Hydrocharitaceae	Thalassia testudinum	12	gene.Thate01g30300, gene.Thate02g11840, gene.Thate02g16570 ... gene.Thate04g08020, gene.Thate04g28130, gene.Thate07g11580, gene.Thate08g09490, gene.Thate08g12520, gene.Thate08g15060, gene.Thate08g15320, gene.Thate08g15330, gene.Thate08g15340
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-5089, nbisL1-mrna-5454, nbisL1-mrna-9290 ... nbisL1-mrna-9291, nbisL1-mrna-9292
Nitrariaceae	Nitraria sibirica	20	evm.TU.LG01.2435, evm.TU.LG04.1145, evm.TU.LG04.2187 ... evm.TU.LG04.2188, evm.TU.LG04.2189, evm.TU.LG04.767, evm.TU.LG05.1050, evm.TU.LG05.1053, evm.TU.LG05.1055, evm.TU.LG05.1056, evm.TU.LG05.1096, evm.TU.LG05.1960, evm.TU.LG05.1961, evm.TU.LG05.1962, evm.TU.LG05.253, evm.TU.LG05.254, evm.TU.LG08.442, evm.TU.LG11.1262, evm.TU.LG11.1263, evm.TU.LG12.1221
Plantaginaceae	Plantago ovata	20	Pov_00000553, Pov_00004254, Pov_00005742, Pov_00005746 ... Pov_00005751, Pov_00005852, Pov_00007297, Pov_00008317, Pov_00008431, Pov_00011925, Pov_00024915, Pov_00025080, Pov_00026083, Pov_00030761, Pov_00031836, Pov_00031839, Pov_00031952, Pov_00031953, Pov_00031954, Pov_00036788
Plumbaginaceae	Limonium bicolor	13	Lb0G37919, Lb3G21280, Lb4G21932, Lb4G22289, Lb4G22291 ... Lb4G22305, Lb4G24484, Lb7G34588, Lb7G34732, Lb7G35095, Lb7G35109, Lb7G35111, Lb7G35196
Poaceae	Echinochloa crus-galli	27	AH02.1687, AH06.1925, AH06.1926, AH06.1928, AH06.1929 ... AH06.1931, AH06.2283, AH06.2284, AH07.715, AH08.1104, AH08.2284, BH02.1909, BH04.553, BH06.1772, BH07.3971, BH07.3973, BH07.3975, BH07.846, BH08.1098, CH02.2048, CH04.550, CH06.1965, CH06.1966, CH06.2306, CH07.603, CH08.1209, CH08.2622
Poaceae	Eleusine coracana subsp. coracana	12	gene-QOZ80_1AG0019410, gene-QOZ80_1BG0068620 ... gene-QOZ80_2AG0105040, gene-QOZ80_2BG0158510, gene-QOZ80_6AG0542300, gene-QOZ80_6AG0544870, gene-QOZ80_6AG0544880, gene-QOZ80_6BG0495530, gene-QOZ80_6BG0498370, gene-QOZ80_8AG0625960, gene-QOZ80_8AG0639700, gene-QOZ80_8BG0654000
Poaceae	Hordeum vulgare	10	HORVU.MOREX.r3.2HG0194640.1, HORVU.MOREX.r3.2HG0197670.1 ... HORVU.MOREX.r3.3HG0260610.1, HORVU.MOREX.r3.5HG0524670.1, HORVU.MOREX.r3.6HG0573120.1, HORVU.MOREX.r3.7HG0686960.1, HORVU.MOREX.r3.7HG0724880.1, HORVU.MOREX.r3.7HG0724930.1, HORVU.MOREX.r3.7HG0724970.1, HORVU.MOREX.r3.7HG0725000.1.CDS1
Poaceae	Lolium multiflorum	9	gene-QYE76_003617, gene-QYE76_008815, gene-QYE76_008816 ... gene-QYE76_016574, gene-QYE76_021324, gene-QYE76_030508, gene-QYE76_035077, gene-QYE76_035078, gene-QYE76_035079
Poaceae	Oryza coarctata	12	Oco01G011400, Oco02G011790, Oco03G004940, Oco04G004980 ... Oco11G010650, Oco11G012800, Oco12G010050, Oco12G010710, Oco12G010720, Oco12G012930, Oco15G006280, Oco16G006140
Poaceae	Oryza sativa	9	LOC_Os01g33300.1, LOC_Os02g10300.1, LOC_Os06g31270.1 ... LOC_Os06g35300.1, LOC_Os06g35320.1, LOC_Os06g35370.1, LOC_Os06g40880.1, LOC_Os06g40890.1, LOC_Os08g23790.1
Poaceae	Paspalum vaginatum	9	gene-BS78_03G150800, gene-BS78_04G074300, gene-BS78_K185400 ... gene-BS78_07G127300, gene-BS78_07G217300, gene-BS78_10G159000, gene-BS78_10G190200, gene-BS78_10G190300, gene-BS78_10G190400
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0202130, Pt_Chr0202175, Pt_Chr0400733, Pt_Chr0400734 ... Pt_Chr0400774, Pt_Chr0400775, Pt_Chr0401911, Pt_Chr0401932, Pt_Chr0403463, Pt_Chr0403481
Poaceae	Sporobolus alterniflorus	18	Chr02G018680, Chr02G030100, Chr03G007980, Chr05G015070 ... Chr08G007800, Chr0G005580, Chr10G016000, Chr10G017990, Chr11G004630, Chr11G006390, Chr16G010860, Chr16G012530, Chr16G018680, Chr17G006070, Chr17G009930, Chr17G011850, Chr17G017720, Chr29G008070
Poaceae	Thinopyrum elongatum	9	Tel2E01G790400, Tel2E01G791200, Tel5E01G742400 ... Tel6E01G331900, Tel7E01G473000, Tel7E01G678300, Tel7E01G678400, Tel7E01G678500, Tel7E01G678600
Poaceae	Triticum dicoccoides	18	gene_TRIDC2AG066410, gene_TRIDC2AG066490 ... gene_TRIDC2BG071500, gene_TRIDC2BG071510, gene_TRIDC2BG071580, gene_TRIDC5AG067070, gene_TRIDC5BG072260, gene_TRIDC6AG022420, gene_TRIDC6BG028890, gene_TRIDC7AG035360, gene_TRIDC7AG056360, gene_TRIDC7AG056380, gene_TRIDC7AG056390, gene_TRIDC7AG056430, gene_TRIDC7BG048760, gene_TRIDC7BG048770, gene_TRIDC7BG048790, gene_TRIDC7BG048830
Poaceae	Triticum aestivum	28	TraesCS2A02G468400.1, TraesCS2A02G469000.1 ... TraesCS2B02G491300.1, TraesCS2B02G491900.1, TraesCS2D02G468500.1, TraesCS2D02G469100.1, TraesCS3D02G202000.1, TraesCS5A02G468900.1, TraesCS5B02G481500.1, TraesCS5D02G481800.1, TraesCS6A02G159000.1, TraesCS6B02G192300.1, TraesCS6D02G153500.1, TraesCS7A02G270000.1, TraesCS7A02G404700.1, TraesCS7A02G404800.1, TraesCS7A02G404900.1, TraesCS7A02G405000.1, TraesCS7B02G168200.1, TraesCS7B02G304100.1, TraesCS7B02G304200.1, TraesCS7B02G304400.1, TraesCS7B02G304500.1, TraesCS7D02G270500.1, TraesCS7D02G397900.1, TraesCS7D02G398100.1, TraesCS7D02G398900.1, TraesCS7D02G399000.1
Poaceae	Zea mays	33	Zm00001eb028200_P002, Zm00001eb132550_P001 ... Zm00001eb177660_P002, Zm00001eb205940_P001, Zm00001eb236170_P001, Zm00001eb236180_P001, Zm00001eb236200_P001, Zm00001eb236220_P001, Zm00001eb236250_P001, Zm00001eb275880_P001, Zm00001eb275900_P001, Zm00001eb275910_P002, Zm00001eb275920_P001, Zm00001eb275930_P001, Zm00001eb275940_P001, Zm00001eb275950_P001, Zm00001eb275970_P001, Zm00001eb275980_P001, Zm00001eb276000_P001, Zm00001eb276010_P001, Zm00001eb276020_P001, Zm00001eb276030_P001, Zm00001eb276040_P001, Zm00001eb276060_P001, Zm00001eb276070_P001, Zm00001eb276080_P001, Zm00001eb276090_P001, Zm00001eb276100_P001, Zm00001eb277810_P001, Zm00001eb341870_P001, Zm00001eb442160_P001, Zm00001eb442230_P001, Zm00001eb442680_P001
Poaceae	Zoysia japonica	8	nbis-gene-10040, nbis-gene-10294, nbis-gene-17592 ... nbis-gene-33475, nbis-gene-41027, nbis-gene-45876, nbis-gene-46574, nbis-gene-52410
Poaceae	Zoysia macrostachya	7	Zma_g10543, Zma_g12385, Zma_g23943, Zma_g24480, Zma_g30653 ... Zma_g30816, Zma_g33063
Portulacaceae	Portulaca oleracea	16	evm.TU.LG01.9, evm.TU.LG01.98, evm.TU.LG04.1822 ... evm.TU.LG04.1823, evm.TU.LG04.1824, evm.TU.LG04.1825, evm.TU.LG04.650, evm.TU.LG06.541, evm.TU.LG06.542, evm.TU.LG06.543, evm.TU.LG06.544, evm.TU.LG08.898, evm.TU.LG16.1133, evm.TU.LG20.1419, evm.TU.LG21.511, evm.TU.LG22.1029
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g17600, gene.Posoc03g10130, gene.Posoc03g10170 ... gene.Posoc03g10180, gene.Posoc07g12040
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_1_RagTag.2402, evm.TU.Scaffold_5_RagTag.1598 ... evm.TU.Scaffold_6_RagTag.577, evm.TU.Scaffold_9_RagTag.1420, evm.TU.Scaffold_9_RagTag.1421
Rhizophoraceae	Carallia pectinifolia	14	nbisL1-mrna-11490, nbisL1-mrna-12086, nbisL1-mrna-1359 ... nbisL1-mrna-16117, nbisL1-mrna-20339, nbisL1-mrna-20340, nbisL1-mrna-20341, nbisL1-mrna-20342, nbisL1-mrna-20562, nbisL1-mrna-20563, nbisL1-mrna-20564, nbisL1-mrna-21415, nbisL1-mrna-29320, nbisL1-mrna-5167
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-14535, nbisL1-mrna-15870, nbisL1-mrna-20143 ... nbisL1-mrna-21439
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-21415, nbisL1-mrna-21416, nbisL1-mrna-3180 ... nbisL1-mrna-472
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000003l.888, evm.TU.utg000006l.211 ... evm.TU.utg000006l.919, evm.TU.utg000011l.329, evm.TU.utg000016l.9
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10088, nbisL1-mrna-12186, nbisL1-mrna-13882 ... nbisL1-mrna-4569
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-15534, nbisL1-mrna-18205, nbisL1-mrna-22526 ... nbisL1-mrna-3669, nbisL1-mrna-4654
Salicaceae	Populus euphratica	19	populus_peu00718, populus_peu02416, populus_peu02417 ... populus_peu02418, populus_peu11881, populus_peu19075, populus_peu19076, populus_peu19077, populus_peu19078, populus_peu22239, populus_peu22240, populus_peu22245, populus_peu22246, populus_peu22283, populus_peu23471, populus_peu26944, populus_peu31276, populus_peu31278, populus_peu37559
Solanaceae	Lycium barbarum	12	gene-LOC132604906, gene-LOC132615599, gene-LOC132617850 ... gene-LOC132619309, gene-LOC132621089, gene-LOC132624091, gene-LOC132624465, gene-LOC132636699, gene-LOC132638742, gene-LOC132638743, gene-LOC132638744, gene-LOC132638745
Solanaceae	Solanum chilense	7	SOLCI001861200, SOLCI002039200, SOLCI002459400 ... SOLCI005438400, SOLCI006044200, SOLCI006369500, SOLCI006407800
Solanaceae	Solanum pennellii	10	gene-LOC107001312, gene-LOC107001957, gene-LOC107005867 ... gene-LOC107016662, gene-LOC107022765, gene-LOC107025165, gene-LOC107025284, gene-LOC107025541, gene-LOC107029783, gene-LOC114076006
Tamaricaceae	Reaumuria soongarica	9	gene_13100, gene_13720, gene_157, gene_17858, gene_18028 ... gene_6226, gene_6460, gene_7072, gene_9442
Zosteraceae	Zostera marina	11	Zosma01g39670.v3.1, Zosma01g39680.v3.1, Zosma02g03360.v3.1 ... Zosma02g03370.v3.1, Zosma03g07970.v3.1, Zosma03g07980.v3.1, Zosma03g07990.v3.1, Zosma03g08010.v3.1, Zosma03g13090.v3.1, Zosma03g14510.v3.1, Zosma03g32440.v3.1