Basic Information
Locus ID:
nbisL1-mrna-5080
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 6371745 | 6376179 | - | nbisL1-mrna-5080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 76,015.52 Da | 53.53 | 78.58 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 13 | 182 | 1.1355E-55 | - |
| Pfam | PF00582 | Universal stress protein family | 12 | 171 | 1.7E-9 | IPR006016 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 509 | 652 | 1.9E-28 | IPR001245 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 12 | 157 | 9.21E-9 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 488 | 675 | 7.42E-50 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 578 | 683 | 1.8E-23 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 10 | 179 | 1.4E-11 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 476 | 577 | 3.1E-25 | - |
| SMART | SM00220 | serkin_6 | 505 | 683 | 3.9E-8 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 505 | 683 | 28.598042 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 623 | 635 | - | IPR008271 |
| Coils | Coil | Coil | 371 | 398 | - | - |
| Coils | Coil | Coil | 409 | 460 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24370.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_048329704.1 | U-box domain-containing protein 35-like [Ziziphus jujuba var. spinosa] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N5JHU8 | Protein kinase domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_028693 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology