Basic Information
Locus ID:
nbisL1-mrna-5075
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 3040046 | 3043140 | - | nbisL1-mrna-5075 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 32,082.56 Da | 43.84 | 92.29 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00063 | Myosin head (motor domain) | 47 | 121 | 4.1E-15 | IPR001609 |
| Pfam | PF00063 | Myosin head (motor domain) | 129 | 167 | 1.2E-9 | IPR001609 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 45 | 279 | 8.35E-32 | IPR027417 |
| Gene3D | G3DSA:3.40.850.10 | Kinesin motor domain | 127 | 172 | 6.9E-11 | IPR036961 |
| Gene3D | G3DSA:3.40.850.10 | Kinesin motor domain | 34 | 126 | 3.0E-19 | IPR036961 |
| SMART | SM00242 | MYSc_2a | 39 | 278 | 0.0057 | IPR001609 |
| ProSiteProfiles | PS51456 | Myosin motor domain profile. | 45 | 280 | 20.642616 | IPR001609 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08730.2 | - | 0 |
| RefSeq | XP_015575860.2 | - | 0 |
| F4HXP9 | Myosin-9 OS=Arabidopsis thaliana OX=3702 GN=XI-C PE=2 SV=1 | 0 | |
| TrEMBL | B9S4V9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033730 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl21469, Sgl32083, Sgl32764, Sgl38048, Sgl47658, Sgl73332 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000046696 |
| Apiaceae | Apium graveolens | 1 | Ag10G00690 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G001510 |
| Brassicaceae | Brassica nigra | 2 | BniB05g004830.2N, BniB06g055190.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g23920 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013377 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18016 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.2141, BH01.50 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009586, gene-QYE76_028916 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr05G022250, Chr0G030460, Chr12G037710, Chr13G016450 |
| Poaceae | Zea mays | 1 | Zm00001eb343050_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-15709, nbis-gene-16142, nbis-gene-29400 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG15.968, evm.TU.LG16.1283, evm.TU.LG20.1277 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.974 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-21221, nbisL1-mrna-26239, nbisL1-mrna-27601 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7005 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10312, nbisL1-mrna-18336, nbisL1-mrna-7266 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.481 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009784 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5074, nbisL1-mrna-5075 |
| Salicaceae | Populus euphratica | 2 | populus_peu11888, populus_peu37973 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635994 |