Basic Information
Locus ID:
nbisL1-mrna-5054
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 22085190 | 22087339 | - | nbisL1-mrna-5054 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 34,415.74 Da | 57.58 | 70.96 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 16 | 173 | 4.6E-75 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 4 | 96 | 1.6E-37 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 98 | 171 | 1.9E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 274 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_021671624.1 | ubiquitin fusion degradation protein 1 homolog isoform X2 [Hevea brasiliensis] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LDP4 | Ubiquitin fusion degradation protein 1 homolog OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology