Basic Information
Locus ID:
nbisL1-mrna-5052
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 6214826 | 6215968 | - | nbisL1-mrna-5052 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 41,208.34 Da | 48.03 | 99.03 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 56 | 97 | 3.8E-4 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 241 | 264 | 0.0061 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 216 | 239 | 0.038 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 175 | 378 | 4.51E-29 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 52 | 94 | 1.44E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 295 | 380 | 1.1E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 51 | 294 | 6.0E-33 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 242 | 267 | 3.3E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 216 | 241 | 2.0E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 348 | 373 | 14.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 268 | 293 | 1.8E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 190 | 215 | 3.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 60 | 101 | 0.0052 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_011017769.1 | PREDICTED: EIN3-binding F-box protein 1-like [Populus euphratica] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JKB4 | EIN3-binding F-box protein 1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology