Basic Information
Locus ID:
nbisL1-mrna-5051
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 13713341 | 13722102 | + | nbisL1-mrna-5051 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 98,836.60 Da | 47.23 | 78.31 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 459 | 503 | 2.8E-14 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 251 | 305 | 3.1E-12 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 703 | 829 | 5.61E-9 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 508 | 561 | 2.26E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 577 | 643 | 4.53E-6 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 584 | 646 | 1.8E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 513 | 564 | 1.7E-15 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 685 | 850 | 9.0E-7 | - |
| SMART | SM00249 | PHD_3 | 520 | 561 | 2.1E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 587 | 644 | 0.041 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 693 | 853 | 10.350739 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 585 | 646 | 8.626699 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 518 | 563 | 10.0151 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 588 | 643 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 521 | 560 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 119 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_037496987.1 | uncharacterized protein LOC105636265 [Jatropha curcas] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067KHI8 | PHD-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_09035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology