Basic Information
Locus ID:
nbisL1-mrna-5042
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
protein binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 22016711 | 22020193 | - | nbisL1-mrna-5042 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 44,862.43 Da | 38.96 | 80.05 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 344 | 392 | 4.5E-9 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 309 | 394 | 5.25E-15 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 47 | 293 | 8.16E-22 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 328 | 403 | 3.0E-14 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 86 | 304 | 1.0E-10 | IPR027267 |
| SMART | SM00326 | SH3_2 | 340 | 395 | 2.4E-11 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 337 | 396 | 18.346235 | IPR001452 |
| Coils | Coil | Coil | 255 | 275 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 184 | 204 | - | - |
| Coils | Coil | Coil | 221 | 248 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_021652433.1 | SH3 domain-containing protein 2-like isoform X1 [Hevea brasiliensis] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LXP6 | Clathrin binding protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology