Basic Information
Locus ID:
nbisL1-mrna-5038
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 6138007 | 6146639 | + | nbisL1-mrna-5038 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 105,169.52 Da | 38.28 | 78.67 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 492 | 8.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 356 | 911 | 1.01E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 515 | 694 | 2.0E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 744 | 930 | 1.2E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 309 | 514 | 8.7E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 405 | 445 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 492 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 872 | 912 | 2.4 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.0E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 0.78 | IPR001680 |
| SMART | SM00320 | WD40_4 | 628 | 669 | 230.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 0.028 | IPR001680 |
| SMART | SM00320 | WD40_4 | 541 | 582 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 625 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 827 | 869 | 77.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.970131 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 501 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_017438601.1 | topless-related protein 4 [Vigna angularis] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0L9TRH2 | Topless-related protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0027800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology