Basic Information
Locus ID:
nbisL1-mrna-5032
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 21932663 | 21935975 | + | nbisL1-mrna-5032 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 33,903.06 Da | 54.29 | 65.85 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 22 | 157 | 3.82912E-54 | - |
| Pfam | PF00628 | PHD-finger | 141 | 189 | 6.9E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 22 | 136 | 5.6E-23 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 131 | 192 | 7.97E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 205 | 1.0E-20 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 3 | 133 | 2.7E-32 | IPR043151 |
| SMART | SM00439 | BAH_4 | 21 | 137 | 1.8E-43 | IPR001025 |
| SMART | SM00249 | PHD_3 | 141 | 188 | 4.2E-8 | IPR001965 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 137 | 24.522343 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 139 | 190 | 9.196301 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 142 | 187 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39100.1 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. Putative transcription factor containing a PHD finger and BAH motif, required for normal development | 0 |
| RefSeq | XP_030944331.1 | chromatin remodeling protein SHL-like isoform X2 [Quercus lobata] | 0 |
| Q9FEN9 | Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LDI2 | Chromatin remodeling protein SHL-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology