Basic Information
Locus ID:
nbisL1-mrna-5029
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
C1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1447240 | 1448545 | - | nbisL1-mrna-5029 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 28,500.75 Da | 46.66 | 83.88 | -0.20 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G50010.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_039057801.1 | uncharacterized protein LOC120201213 [Hibiscus syriacus] | 0 |
| TrEMBL | A0A6A3BDF8 | Phorbol-ester/DAG-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110195pilonHSYRG00308 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G21810.1, AT2G21830.1, AT2G21840.1, AT2G21850.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000096m.g.v1.0, Thhalv10000100m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01290.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064140.2N, BniB05g064170.2N, BniB07g028200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0001 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12109, nbisL1-mrna-5028, nbisL1-mrna-5029 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.926 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-3275, nbisL1-mrna-3288, nbisL1-mrna-3294 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13823, nbisL1-mrna-5376 |
| Salicaceae | Populus euphratica | 5 | populus_peu08735, populus_peu19514, populus_peu19515 ... |