Basic Information
Locus ID:
nbisL1-mrna-5018
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 5992041 | 5998344 | - | nbisL1-mrna-5018 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 48,142.18 Da | 27.89 | 101.67 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 303 | 399 | 5.08481E-27 | - |
| CDD | cd00030 | C2 | 124 | 226 | 4.6296E-26 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 1 | 108 | 1.1E-6 | IPR039010 |
| Pfam | PF00168 | C2 domain | 122 | 226 | 6.7E-24 | IPR000008 |
| Pfam | PF00168 | C2 domain | 301 | 402 | 2.4E-25 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 297 | 420 | 1.64E-33 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 120 | 251 | 2.83E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 115 | 250 | 1.2E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 285 | 419 | 3.8E-35 | IPR035892 |
| SMART | SM00239 | C2_3c | 302 | 400 | 1.3E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 123 | 223 | 2.7E-24 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 284 | 401 | 21.010328 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 103 | 224 | 20.783073 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 1 | 109 | 15.920635 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 344 | 357 | 2.2E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 318 | 330 | 2.2E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 366 | 374 | 2.2E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.2 | - | 0 |
| RefSeq | XP_015581849.1 | synaptotagmin-5 [Ricinus communis] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2K0D7 | Synaptotagmin-5 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology