Basic Information
Locus ID:
nbisL1-mrna-5010
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 5944963 | 5948678 | + | nbisL1-mrna-5010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 20,558.60 Da | 55.55 | 57.38 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 110 | 175 | 3.83E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 176 | 1.0E-7 | IPR013083 |
| SMART | SM00184 | ring_2 | 116 | 173 | 0.0094 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 116 | 173 | 10.143551 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75400.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034918758.1 | uncharacterized protein LOC118052054 [Populus alba] | 0 |
| TrEMBL | A0A2P2IZE7 | Uncharacterized protein LOC105641262 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33029 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10595 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014259 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g193160 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg25552 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19234 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011044 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41921, Sgl46719 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010635, gene:ENSEOMG00000033857 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0022720 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30261710, pistato.v30262210 |
| Apiaceae | Apium graveolens | 2 | Ag3G02740, AgUnG01151 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G07759 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1438 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1502 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-67 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001109 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.88, evm.TU.Scaffold_4_RagTag.2269 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12907, nbisL1-mrna-25198 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17320, nbisL1-mrna-6623 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16524, nbisL1-mrna-5010 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1327, evm.TU.utg000033l.59 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000795, Maker00014999 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16716 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14487 |
| Salicaceae | Populus euphratica | 2 | populus_peu05697, populus_peu11080 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603109, gene-LOC132636985 |
| Solanaceae | Solanum chilense | 2 | SOLCI003627100, SOLCI007528800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005668, gene-LOC107024624 |