Basic Information
Locus ID:
nbisL1-mrna-5003
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Universal stress protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 21724356 | 21726337 | - | nbisL1-mrna-5003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 20,155.10 Da | 38.35 | 102.22 | -0.10 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21620.1 | Adenine nucleotide alpha hydrolases-like superfamily protein. Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment. | 0 |
| RefSeq | XP_021627368.1 | universal stress protein PHOS32 isoform X1 [Manihot esculenta] | 0 |
| TrEMBL | A0A2P2JA76 | Uncharacterized protein MANES_11G086500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg987 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21660 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010221 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12431, Sbi_jg45908 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20247 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022457 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56063, Sgl61396, Sgl61632 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015313, gene:ENSEOMG00000037138 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007490, CQ.Regalona.r1.9AG0016980 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30114430, pistato.v30114510, pistato.v30114830 |
| Apiaceae | Apium graveolens | 4 | Ag1G00932, Ag6G02574, Ag9G00061, AgUnG01117 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010290, scaffold002246G000060 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703730 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2736.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri8G12681, FtriNA30477 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G21620.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000338m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g00780.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g017400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0147 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0174 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0384s00012.v1.0, Dusal.0886s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g20560 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG08.148, evm.TU.LG08.149 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00007511, Pov_00021946, Pov_00041278 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G16700, Lb3G17262 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3148, BH07.2979, CH07.3047 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0142510, gene-QOZ80_2BG0197980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0607560.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_024643 |
| Poaceae | Oryza coarctata | 2 | Oco03G019310, Oco04G020100 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g47650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G247800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203929 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G004100, Chr09G022270, Chr15G005510 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG041820, gene_TRIDC6BG048830 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G015000.1.cds1, TraesCS2A02G015300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb252090_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8988 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14232 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.359, evm.TU.LG08.1803, evm.TU.LG09.1557 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g23610, gene.Posoc06g01200 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.203 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5003 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9910 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9452 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.1111 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004881 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14757 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1246 |
| Salicaceae | Populus euphratica | 3 | populus_peu08863, populus_peu08864, populus_peu36491 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599180 |
| Solanaceae | Solanum chilense | 1 | SOLCI007333200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014666 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.11445_chr02_+ |