Basic Information
Locus ID:
nbisL1-mrna-4988
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 21609417 | 21613082 | - | nbisL1-mrna-4988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 42,862.64 Da | 38.76 | 92.00 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 170 | 281 | 1.1E-14 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 148 | 342 | 1.04E-31 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 279 | 356 | 3.7E-7 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 134 | 242 | 3.1E-34 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 167 | 391 | 12.273273 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 173 | 195 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 391 | - | - |
| Coils | Coil | Coil | 87 | 107 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34500.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_020534547.1 | probable receptor-like serine/threonine-protein kinase At4g34500 isoform X2 [Jatropha curcas] | 0 |
| Q6NKZ9 | Probable receptor-like serine/threonine-protein kinase At4g34500 OS=Arabidopsis thaliana OX=3702 GN=At4g34500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8A0L1 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_017674 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4988 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-9902, nbisL1-mrna-9903 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1260 |