Basic Information
Locus ID:
nbisL1-mrna-4987
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the CAP family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 21601796 | 21605230 | - | nbisL1-mrna-4987 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 50,585.04 Da | 35.02 | 77.69 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08603 | Adenylate cyclase associated (CAP) C terminal | 312 | 469 | 1.2E-59 | IPR013912 |
| SUPERFAMILY | SSF69340 | C-terminal domain of adenylylcyclase associated protein | 312 | 471 | 1.57E-56 | IPR036223 |
| SUPERFAMILY | SSF101278 | N-terminal domain of adenylylcyclase associated protein, CAP | 40 | 237 | 2.35E-56 | IPR036222 |
| Gene3D | G3DSA:1.25.40.330 | - | 40 | 215 | 1.8E-48 | IPR036222 |
| Gene3D | G3DSA:2.160.20.70 | - | 311 | 471 | 1.3E-66 | IPR016098 |
| SMART | SM00673 | carp | 350 | 387 | 3.1E-11 | IPR006599 |
| SMART | SM00673 | carp | 388 | 425 | 1.9E-7 | IPR006599 |
| ProSiteProfiles | PS51329 | C-CAP/cofactor C-like domain profile. | 312 | 449 | 41.861912 | IPR017901 |
| ProSitePatterns | PS01088 | CAP protein signature 1. | 5 | 17 | - | IPR018106 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 241 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34490.1 | cyclase associated protein 1. CYCLASE ASSOCIATED PROTEIN | 0 |
| RefSeq | XP_050235047.1 | cyclase-associated protein 1 [Mercurialis annua] | 0 |
| O65902 | Cyclase-associated protein 1 OS=Arabidopsis thaliana OX=3702 GN=CAP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2IPT8 | Adenylyl cyclase-associated protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg998 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21641 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010248 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217530 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12451, Sbi_jg45865 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20222 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022440 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56087, Sgl61420, Sgl61655 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019686, gene:ENSEOMG00000037568 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007750, CQ.Regalona.r1.9AG0016780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30114230 |
| Apiaceae | Apium graveolens | 4 | Ag1G00927, Ag7G01701, Ag9G00051, Ag9G00098 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G001290, COCNU_13G005290 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103697965, gene-LOC103704236, gene-LOC120103922 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2520.V1.1, AsparagusV1_08.826.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G02463, Ftri3G01619, Ftri4G12843 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34490.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025082m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32280.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g087030.2N, BniB03g020690.2N, BniB05g003810.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0099 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0116 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14060 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1138s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g31820, gene.Thate06g14370 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.129 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007529, Pov_00035831 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G13461, Lb2G13466, Lb2G13467, Lb3G17964 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.778, AH08.1725, BH01.924, BH08.1773, CH01.939 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0218360, gene-QOZ80_3BG0263600 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0338300.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031309, gene-QYE76_062298 |
| Poaceae | Oryza coarctata | 4 | Oco05G022130, Oco06G022980, Oco15G013540, Oco16G009020 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g51250.1, LOC_Os08g34780.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G099600, gene-BS78_07G153100 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G027460, Chr07G026380, Chr12G030840, Chr16G014820 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G092900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG040750, gene_TRIDC4BG008420 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G260800.1, TraesCS4B02G053800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb040800_P001, Zm00001eb055650_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14895, nbis-gene-15977 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2917, Zma_g599 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1844, evm.TU.LG22.20 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g26470 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.222 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4987 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14093, nbisL1-mrna-18732 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3283, nbisL1-mrna-9901 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.821, evm.TU.utg000016l.95 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005746, Maker00016887 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14745, nbisL1-mrna-4653 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1261, nbisL1-mrna-22417 |
| Salicaceae | Populus euphratica | 2 | populus_peu08881, populus_peu36469 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132599165, gene-LOC132606564, gene-LOC132620192 |
| Solanaceae | Solanum chilense | 2 | SOLCI000662700, SOLCI003828100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002530, gene-LOC107008896 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16831 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1044 |
| Zosteraceae | Zostera marina | 2 | Zosma04g03110.v3.1, Zosma06g02590.v3.1 |