Basic Information
Locus ID:
nbisL1-mrna-4974
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
ABI3
Description:
B3 domain-containing transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 2505507 | 2512197 | - | nbisL1-mrna-4974 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 120,809.35 Da | 45.13 | 76.94 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10015 | BfiI_C_EcoRII_N_B3 | 608 | 712 | 8.53347E-35 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 957 | 1075 | 9.5E-15 | IPR001245 |
| Pfam | PF02362 | B3 DNA binding domain | 611 | 709 | 1.8E-15 | IPR003340 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 609 | 707 | 4.71E-20 | IPR015300 |
| SUPERFAMILY | SSF52047 | RNI-like | 768 | 877 | 1.02E-11 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 955 | 1073 | 8.52E-26 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 751 | 857 | 1.4E-13 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 950 | 1095 | 1.6E-26 | - |
| Gene3D | G3DSA:2.40.330.10 | - | 606 | 729 | 2.4E-33 | IPR015300 |
| SMART | SM00219 | tyrkin_6 | 829 | 1094 | 0.0081 | IPR020635 |
| SMART | SM01019 | B3_2 | 610 | 715 | 1.2E-17 | IPR003340 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 808 | 1095 | 17.092966 | IPR000719 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 610 | 715 | 10.785477 | IPR003340 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 718 | 738 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 509 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00290 (Valine, leucine and isoleucine biosynthesis)
map00290 (Valine, leucine and isoleucine biosynthesis)
ko00650 (Butanoate metabolism)
map00650 (Butanoate metabolism)
ko00660 (C5-Branched dibasic acid metabolism)
map00660 (C5-Branched dibasic acid metabolism)
ko00770 (Pantothenate and CoA biosynthesis)
map00770 (Pantothenate and CoA biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01210 (2-Oxocarboxylic acid metabolism)
map01210 (2-Oxocarboxylic acid metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Module:
Reaction:
R00006 (2-Acetolactate + CO2 <=> 2 Pyruvate)
R00014 (Pyruvate + Thiamin diphosphate <=> 2-(alpha-Hydroxyethyl)thiamine diphosphate + CO2)
R00226 ((S)-2-Acetolactate + CO2 <=> 2 Pyruvate)
R03050 (2-Acetolactate + Thiamin diphosphate <=> 2-(alpha-Hydroxyethyl)thiamine diphosphate + Pyruvate)
R04672 ((S)-2-Acetolactate + Thiamin diphosphate <=> 2-(alpha-Hydroxyethyl)thiamine diphosphate + Pyruvate)
R04673 (2-Oxobutanoate + 2-(alpha-Hydroxyethyl)thiamine diphosphate <=> (S)-2-Aceto-2-hydroxybutanoate + Thiamin diphosphate)
R08648 (Pyruvate + 2-Oxobutanoate <=> (S)-2-Aceto-2-hydroxybutanoate + CO2)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24650.1 | AP2/B3-like transcriptional factor family protein. Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed. Alternative splicing of ABI3 is developmentally regulated by SUA (AT3G54230). | 0 |
| RefSeq | XP_021679249.1 | B3 domain-containing transcription factor ABI3-like [Hevea brasiliensis] | 0 |
| Q01593 | B3 domain-containing transcription factor ABI3 OS=Arabidopsis thaliana OX=3702 GN=ABI3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6K900 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8633 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6467 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167370 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26518, Sbi_jg34045 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15049 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011942 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73802, Sgl77307 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006235, gene:ENSEOMG00000039588 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010540, CQ.Regalona.r1.7BG0012710 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30014830 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G007950 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705688 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2008.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G12309 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003110m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g22420.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g025790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2029 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2136 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g12810 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1512 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015128 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28681 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4269, BH02.4301, CH02.4341 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0043930, gene-QOZ80_1BG0093980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0308890.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G028000, Oco02G029110 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g68370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G376600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0600421, Pt_Chr0600426, Pt_Chr0600437 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G002970, Chr03G022410, Chr05G031480, Chr08G019560 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G663200 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG059180 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G417300.1, TraesCS3B02G452200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb143690_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11047, nbis-gene-28402 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11776, Zma_g9234 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.465, evm.TU.LG04.294 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g02270 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1182, evm.TU.Scaffold_9_RagTag.1085 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11650, nbisL1-mrna-21100 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3856, nbisL1-mrna-5744 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11263, nbisL1-mrna-7252 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000006l.271, evm.TU.utg000003l.407 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009348 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1392, nbisL1-mrna-9860 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19882, nbisL1-mrna-4974 |
| Salicaceae | Populus euphratica | 1 | populus_peu30809 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132607445, gene-LOC132607478, gene-LOC132610670 |
| Solanaceae | Solanum chilense | 2 | SOLCI004651900, SOLCI004652000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107022819, gene-LOC107022946 |
| Zosteraceae | Zostera marina | 1 | Zosma05g08350.v3.1 |