Basic Information
Locus ID:
nbisL1-mrna-4971
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 2471604 | 2479731 | - | nbisL1-mrna-4971 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 154,736.52 Da | 42.80 | 73.59 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 967 | 1224 | 2.10289E-108 | - |
| CDD | cd06410 | PB1_UP2 | 187 | 283 | 6.6556E-47 | - |
| Pfam | PF00108 | Thiolase, N-terminal domain | 1307 | 1401 | 3.0E-18 | IPR020616 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 963 | 1224 | 1.0E-63 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 200 | 282 | 2.3E-18 | IPR000270 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 200 | 289 | 2.55E-19 | - |
| SUPERFAMILY | SSF53901 | Thiolase-like | 1251 | 1401 | 5.87E-16 | IPR016039 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 957 | 1223 | 4.43E-76 | IPR011009 |
| Gene3D | G3DSA:3.40.47.10 | - | 1237 | 1401 | 2.3E-28 | IPR016039 |
| Gene3D | G3DSA:3.10.20.90 | - | 204 | 284 | 4.8E-11 | - |
| Gene3D | G3DSA:3.40.47.10 | - | 1303 | 1344 | 2.3E-28 | IPR016039 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 954 | 1230 | 3.2E-78 | - |
| SMART | SM00220 | serkin_6 | 961 | 1227 | 2.2E-57 | IPR000719 |
| SMART | SM00666 | PB1_new | 198 | 285 | 1.1E-27 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 961 | 1227 | 40.823952 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1086 | 1098 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 967 | 992 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1195 | 1217 | 6.9E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1080 | 1098 | 6.9E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1043 | 1056 | 6.9E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1151 | 1173 | 6.9E-14 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 176 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24715.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_021630743.2 | uncharacterized protein LOC110628407 [Manihot esculenta] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IMV1 | Uncharacterized protein MANES_12G042400 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology