Basic Information
Locus ID:
nbisL1-mrna-4969
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 13042167 | 13049007 | + | nbisL1-mrna-4969 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 92,488.63 Da | 59.96 | 79.81 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 659 | 718 | 2.42759E-12 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 250 | 358 | 6.8E-6 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 657 | 718 | 6.6E-8 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 656 | 719 | 2.81E-13 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 127 | 384 | 2.87E-17 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 408 | 5.9E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 645 | 722 | 8.4E-11 | - |
| SMART | SM00358 | DRBM_3 | 655 | 719 | 1.7E-9 | IPR014720 |
| SMART | SM00577 | forpap2 | 192 | 368 | 1.7E-8 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 133 | 384 | 14.167484 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 654 | 720 | 15.024193 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 760 | 833 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 613 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 833 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_021622867.1 | RNA polymerase II C-terminal domain phosphatase-like 2 [Manihot esculenta] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2M1G0 | protein-serine/threonine phosphatase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology