Basic Information
Locus ID:
nbisL1-mrna-4961
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the glycosyl hydrolase 18 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 5655091 | 5656655 | + | nbisL1-mrna-4961 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 42,535.65 Da | 36.55 | 75.58 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 25 | 365 | 1.66938E-143 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 30 | 359 | 9.7E-75 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 29 | 359 | 1.02E-68 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 265 | 330 | 4.06E-12 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 45 | 359 | 9.7E-102 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 264 | 330 | 9.7E-102 | IPR029070 |
| SMART | SM00636 | 2g34 | 27 | 359 | 4.3E-89 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 27 | 375 | 67.840813 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 133 | 141 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19800.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_021634450.2 | class V chitinase CHIT5b [Manihot esculenta] | 0 |
| A0A072UR65 | Class V chitinase CHIT5b OS=Medicago truncatula OX=3880 GN=CHIT5B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JMW1 | Uncharacterized protein MANES_14G141000 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology