Basic Information
Locus ID:
nbisL1-mrna-4955
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 5610294 | 5617502 | + | nbisL1-mrna-4955 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 21,086.36 Da | 35.50 | 72.33 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 1 | 134 | 2.1E-31 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1 | 128 | 1.89E-33 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1 | 157 | 2.4E-42 | - |
| SMART | SM00636 | 2g34 | 1 | 189 | 3.8E-4 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 1 | 189 | 30.89362 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_021634672.1 | class V chitinase [Manihot esculenta] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9ULQ6 | GH18 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_14G111400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology