Basic Information
Locus ID:
nbisL1-mrna-4949
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 5573975 | 5575528 | - | nbisL1-mrna-4949 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 33,655.71 Da | 39.15 | 87.26 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 14 | 114 | 2.3E-10 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 8 | 209 | 2.72E-21 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 104 | 214 | 3.9E-14 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 4 | 103 | 1.4E-16 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 9 | 109 | 14.451406 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58170.1 | SHV3-like 5. | 0 |
| RefSeq | XP_011033465.1 | PREDICTED: glycerophosphodiester phosphodiesterase GDPDL6-like [Populus euphratica] | 0 |
| Q9LVN0 | Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 GN=GDPDL7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7ZTV1 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_023681 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology