Basic Information
Locus ID:
nbisL1-mrna-4945
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 2342154 | 2343511 | + | nbisL1-mrna-4945 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 12,067.25 Da | 56.81 | 58.92 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 29 | 102 | 2.52736E-46 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 31 | 101 | 1.2E-23 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 17 | 106 | 2.22E-27 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 29 | 109 | 3.7E-39 | - |
| SMART | SM00213 | ubq_7 | 31 | 102 | 1.3E-13 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 29 | 106 | 16.51585 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_030933123.1 | small ubiquitin-related modifier 1-like [Quercus lobata] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7N2MME5 | Small ubiquitin-related modifier OS=Quercus lobata OX=97700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology