Basic Information
Locus ID:
nbisL1-mrna-4933
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Ubiquitin-activating enzyme E1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12764188 | 12769236 | + | nbisL1-mrna-4933 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 121,912.63 Da | 39.43 | 84.72 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01491 | Ube1_repeat1 | 95 | 480 | 6.71427E-151 | - |
| CDD | cd01490 | Ube1_repeat2 | 512 | 1050 | 0.0 | - |
| Pfam | PF09358 | Ubiquitin fold domain | 1003 | 1092 | 1.6E-21 | IPR018965 |
| Pfam | PF16191 | Ubiquitin-activating enzyme E1 four-helix bundle | 342 | 411 | 7.5E-21 | IPR032420 |
| Pfam | PF10585 | Ubiquitin-activating enzyme active site | 680 | 933 | 2.5E-82 | IPR019572 |
| Pfam | PF16190 | Ubiquitin-activating enzyme E1 FCCH domain | 270 | 340 | 9.2E-27 | IPR032418 |
| Pfam | PF00899 | ThiF family | 97 | 471 | 1.1E-30 | IPR000594 |
| Pfam | PF00899 | ThiF family | 493 | 991 | 1.4E-71 | IPR000594 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 488 | 987 | 8.44E-128 | IPR035985 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 90 | 477 | 2.09E-97 | IPR035985 |
| Gene3D | G3DSA:3.10.290.60 | - | 1005 | 1095 | 4.6E-20 | IPR038252 |
| Gene3D | G3DSA:2.40.30.180 | - | 258 | 339 | 3.8E-110 | IPR042302 |
| Gene3D | G3DSA:1.10.10.2660 | - | 665 | 940 | 2.5E-192 | IPR042063 |
| Gene3D | G3DSA:3.40.50.720 | - | 513 | 990 | 2.5E-192 | - |
| Gene3D | G3DSA:3.40.50.12550 | - | 215 | 503 | 3.8E-110 | - |
| Gene3D | G3DSA:3.50.50.80 | - | 86 | 204 | 5.5E-37 | IPR042449 |
| SMART | SM00985 | UBA_e1_C_a_2 | 970 | 1092 | 1.4E-46 | IPR018965 |
| TIGRFAM | TIGR01408 | Ube1: ubiquitin-activating enzyme E1 | 90 | 1096 | 0.0 | IPR018075 |
| ProSitePatterns | PS00536 | Ubiquitin-activating enzyme signature 1. | 455 | 463 | - | IPR018074 |
| ProSitePatterns | PS00865 | Ubiquitin-activating enzyme active site. | 672 | 680 | - | IPR033127 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 540 | 563 | 6.3E-64 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 741 | 768 | 6.3E-64 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 117 | 141 | 6.3E-64 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 232 | 259 | 6.3E-64 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 587 | 612 | 6.3E-64 | IPR000011 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 80 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30110.1 | ubiquitin-activating enzyme 1. Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the constitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling. | 0 |
| RefSeq | XP_012089793.1 | ubiquitin-activating enzyme E1 1 [Jatropha curcas] | 0 |
| P93028 | Ubiquitin-activating enzyme E1 1 OS=Arabidopsis thaliana OX=3702 GN=UBA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JS67 | E1 ubiquitin-activating enzyme OS=Jatropha curcas OX=180498 GN=JCGZ_00432 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology