Basic Information
Locus ID:
nbisL1-mrna-4895
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 5213531 | 5217270 | - | nbisL1-mrna-4895 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 73,479.39 Da | 36.25 | 100.12 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 150 | 210 | 7.5E-13 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 66 | 3.2E-13 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 331 | 597 | 2.2E-43 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 309 | 598 | 1.78E-74 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 325 | 2.15E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 405 | 616 | 5.9E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 241 | 1.0E-50 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 299 | 404 | 1.7E-34 | - |
| SMART | SM00369 | LRR_typ_2 | 173 | 204 | 45.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 149 | 172 | 0.12 | IPR003591 |
| SMART | SM00220 | serkin_6 | 328 | 597 | 7.6E-31 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 125 | 147 | 210.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 328 | 583 | 34.70393 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 447 | 459 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 334 | 356 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 672 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23950.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_012071584.1 | probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas] | 0 |
| Q0WVM4 | Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana OX=3702 GN=At2g23950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N5MF51 | Protein kinase domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_010057 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology