Basic Information
Locus ID:
nbisL1-mrna-4834
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the ATG8 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 64060425 | 64062517 | + | nbisL1-mrna-4834 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 14,098.16 Da | 41.25 | 91.22 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16128 | Ubl_ATG8 | 12 | 114 | 1.40385E-71 | - |
| Pfam | PF02991 | Autophagy protein Atg8 ubiquitin like | 14 | 117 | 9.4E-52 | IPR004241 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 3 | 117 | 2.07E-43 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 117 | 5.1E-60 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04212 (Longevity regulating pathway - worm)
map04212 (Longevity regulating pathway - worm)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
map04621 (NOD-like receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62040.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_021293993.1 | autophagy-related protein 8C [Herrania umbratica] | 0 |
| A2YS06 | Autophagy-related protein 8C OS=Oryza sativa subsp. indica OX=39946 GN=ATG8C PE=3 SV=2 | 0 | |
| TrEMBL | A0A6J1B450 | Autophagy-related protein OS=Herrania umbratica OX=108875 GN=LOC110423900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology