Basic Information
Locus ID:
nbisL1-mrna-4813
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 63885840 | 63887257 | + | nbisL1-mrna-4813 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 21,635.63 Da | 48.74 | 95.42 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 22 | 55 | 5.6E-17 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 71 | 117 | 9.0E-23 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 92 | 174 | 1.11E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 88 | 5.76E-9 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 56 | 179 | 2.0E-36 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 55 | 2.4E-15 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_040958634.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Gossypium hirsutum] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J5PQ77 | F-box domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_D10G024000v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | contig69197041G000010 |
| Brassicaceae | Brassica nigra | 1 | BniB02g027890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0057 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0065 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4813 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00013444, Pov_00013446, Pov_00013447, Pov_00013448 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7847 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG20.1176 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15999 |